Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs58767525 chr7:64176410 A/C 0 174 22.57 21.98 2.4 KM Plot
UCEC rs6009903 chr22:50239153 C/G 2.29E-6 172 14.4 20.55 22.93 KM Plot
UCEC rs60838228 chr14:75397172 G/A 7.02E-5 167 22.67 19.57 1.67 KM Plot
UCEC rs61077989 chr12:32808532 A/AT 7.83E-5 172 21.3 23.82 24.87 KM Plot
UCEC rs6124372 chr20:40293522 G/A 4.39E-6 172 22.2 23.18 11.53 KM Plot
UCEC rs6129901 chr20:40314444 C/G 5.06E-6 174 11.53 23.57 22.38 KM Plot
UCEC rs61450086 chr1:10508023 T/TGA 0.000108 172 20.33 21 22.7 KM Plot
UCEC rs61648540 chr3:47908129 G/A 1.82E-6 173 22.67 21.6 14.77 KM Plot
UCEC rs61753378 chr16:3726075 G/A 0 170 21.6 24.07 2.3 KM Plot
UCEC rs61857020 chr10:88765914 C/A 4.83E-5 168 25.87 23.57 21.83 KM Plot
UCEC rs62019320 chr15:42895389 C/T 6.03E-5 174 21.9 25.55 22.43 KM Plot
UCEC rs62019322 chr15:42897374 T/C 6.03E-5 174 21.9 25.55 22.43 KM Plot
UCEC rs62327602 chr4:110826015 G/T 2.59E-6 166 21.1 27.33 14.93 KM Plot
UCEC rs62358942 chr5:54363669 G/C 3.06E-12 173 21.1 28.03 18.47 KM Plot
UCEC rs62358945 chr5:54369445 A/G 3.78E-7 174 21.08 27.78 20.33 KM Plot